Next-Generation (NG) IEDB Tools Documentation

• Overview
  • Background & Design Philosophy
  • Notable Features
    • Minimalistic Interface
    • Integration of Related Tools
    • Pipelines
• Getting Started
  • Input Sequence Formats
    • FASTA
    • Whitespace-Separated
    • Named Whitespace-Separated
    • JSON
  • Prediction Parameters
    • Peptide Lengths
    • MHC Alleles
    • Prediction Models
  • Running a Prediction
    • Returning to an Analysis
    • Warnings and Errors
    • Changing Parameters After a Prediction
  • Tabular Results
    • Sorting & Filtering Rows
    • Table States
    • Show/Hide Columns
    • Downloads
• Available Tools
  • Cluster
    • Parameter Selection
    • Results
  • Mutated Peptide Generator
    • VCF Input Files
    • Parameter Selection
    • Results
  • Pepmatch
    • Parameter Selection
    • Results
  • PepX
    • Parameter Selection
    • Results
  • PHBR
    • Input Sequences
    • Parameter Selection
    • Results
  • Peptide Variant Comparison
    • Peptide Variant Comparison
    • Neo-Epitope immunogenicity prediction
  • T cell class I
    • MHC-Binding and Elution Predictions
    • Immunogenicity Predictions
    • MHC-I Processing Pathway Predictions
  • T cell class II
    • MHC-Binding and Elution Predictions
    • Immunogenicity Predictions
• Pipelines
  • Building a Pipeline
    • Passing Filtered Results to Downstream Tool
  • Pipeline Map
  • Saving/Sharing Pipelines
    • Pipeline Steps with Data (pipeline_id)
    • Pipeline Steps without Data (pipeline_spec_id)
  • Notes on the Pipeline Lifecycle
  • Example Pipelines
    • One-Step Pipeline
    • Two-Step Pipeline
    • Three-Step Pipeline
• API usage
  • Typical Workflow
  • Core endpoints
    • /pipeline POST for Submitting Predictions
    • /pipeline GET for Retrieving Pipeline Details
    • /stage GET for Retrieving Stage Information
    • /results GET for Retrieving Stage Results
  • Swagger Documentation
    • Usage
    • Request with Parameters
• Troubleshooting
  • What are the input size limits?
  • Why does PepMatch not seem to complete?
  • How do I get more personalized support?
• Privacy Notice
  • Information We Collect
  • How We Use Your Information
  • Information Sharing
  • Your Choices
  • Security
  • Changes to This Privacy Notice
  • Contact Us