Next-Generation (NG) IEDB Tools Logo
  • Overview
    • Background & Design Philosophy
    • Notable Features
      • Minimalistic Interface
      • Integration of Related Tools
      • Pipelines
  • Getting Started
    • Input Sequence Formats
      • FASTA
      • Whitespace-Separated
      • Named Whitespace-Separated
      • JSON
    • Prediction Parameters
      • Peptide Lengths
      • MHC Alleles
        • Allele Finder for Class I
        • Allele Finder for Class II
      • Prediction Models
    • Running a Prediction
      • Returning to an Analysis
      • Warnings and Errors
      • Changing Parameters After a Prediction
    • Tabular Results
      • Sorting & Filtering Rows
        • Sorting
        • Filtering
      • Table States
      • Show/Hide Columns
      • Downloads
  • Available Tools
    • B Cell
      • B Cell - Sequence Input
        • Methods
        • Input Data
        • Parameter Selection
        • Results
      • B Cell - Structure Input
        • Methods
        • Input Data
        • Parameter Selection
        • Results
    • T Cell
      • T cell class I
        • Binding Predictions
        • Immunogenicity Predictions
        • Processing Predictions
      • T cell class II
        • Binding Predictions
        • Immunogenicity Predictions
        • Processing Predictions
      • Peptide Variant Comparison
        • Methods
        • Input Data
        • Parameter Selection
        • Results
      • Patient Harmonic-mean Best Rank (PHBR)
        • Methods
        • Input Data
        • Parameter Selection
        • Results
    • Cluster
      • Methods
      • Input Data
      • Parameter Selection
      • Results
        • Tabular Results
        • Cluster Visualization
        • Interpreting Results
    • Mutated Peptide Generator
      • Methods
      • Input Data
        • Recommended: Strip Unnecessary Annotations
        • Recommended: Decomposition and Normalization
        • Recommended: SNPEff annotation
      • Parameter Selection
      • Results
        • Tabular Results
        • Interpreting Results
    • Pepmatch
      • Methods
      • Input Data
      • Parameter Selection
      • Results
    • PepX
      • Methods
      • Input Data
      • Parameter Selection
      • Results
        • Peptide Table (Gene)
        • Peptide Gene Summary Table
        • Peptide Table (Transcript)
        • Peptide Transcript Summary Table
  • Pipelines
    • Building a Pipeline
      • Passing Filtered Results to Downstream Tool
    • Pipeline Map
    • Saving/Sharing Pipelines
      • Pipeline Steps with Data (pipeline_id)
      • Pipeline Steps without Data (pipeline_spec_id)
    • Notes on the Pipeline Lifecycle
    • Example Pipelines
      • One-Step Pipeline
      • Two-Step Pipeline
      • Three-Step Pipeline
  • API usage
    • Typical Workflow
    • Core endpoints
      • /pipeline POST for Submitting Predictions
        • Retrieve All Possible Parameters from Each Tool
        • Usage Examples
      • /pipeline GET for Retrieving Pipeline Details
      • /stage GET for Retrieving Stage Information
      • /results GET for Retrieving Stage Results
    • Swagger Documentation
      • Usage
      • Request with Parameters
  • Troubleshooting
    • Why does my prediction consistently fail?
    • What are the input size limits?
    • How do I get more personalized support?
  • Privacy Notice
    • Information We Collect
    • How We Use Your Information
    • Information Sharing
    • Your Choices
    • Security
    • Changes to This Privacy Notice
    • Contact Us
Next-Generation (NG) IEDB Tools
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